Its a question that comes up from time to time I notice and always wanted to delete that clip/ junction box off the top of trans in the teg. so I grabbed the civic's harness.
Thanks to CRIP as well for the help.
at first glance you see the black plug on the harness which covers up the white plug.
after removing the white plug out the black cover you are left with 2 plugs on top. which just slide off. green and a gray one.
each of these plugs have a connection strip in them. the wires do not have continuity from the green to gray plug. only continuity for the wires on that side. hopefully that makes sence. meaning- do not connect a wire from the green side to the gray side. were just removing the box, not rewiring the harness.
http://i855.photobucket.com/albums/ab117/chris_orr/94 Civic/a5acece2.jpg
KEEP WIRES OF SAME COLOR TOGETHER! CONNECT ALL WIRES TO A POINT, SO 4'ISH YELLOW/BLACK, BROWN/YELLOW, AND BLACK/WHITE. YOU SHOULD HAVE 4 SOLDER POINTS.
BLACK/YELLOW CANT REMEMBER. THE YELLOW/BLACK IS THE INJECTORS POWER AND SOME OTHER PLACES, THE BROWN/YELLOW GOES CRANK TO CAM POSISTIONG TO OTHER SENSORS, BLACK/WHITE GO TO THE COIL PACKS.

solder the groups up, add some split loom sleeving for easy and bam!

hope it helps someone
Thanks to CRIP as well for the help.
at first glance you see the black plug on the harness which covers up the white plug.

after removing the white plug out the black cover you are left with 2 plugs on top. which just slide off. green and a gray one.

each of these plugs have a connection strip in them. the wires do not have continuity from the green to gray plug. only continuity for the wires on that side. hopefully that makes sence. meaning- do not connect a wire from the green side to the gray side. were just removing the box, not rewiring the harness.
http://i855.photobucket.com/albums/ab117/chris_orr/94 Civic/a5acece2.jpg
KEEP WIRES OF SAME COLOR TOGETHER! CONNECT ALL WIRES TO A POINT, SO 4'ISH YELLOW/BLACK, BROWN/YELLOW, AND BLACK/WHITE. YOU SHOULD HAVE 4 SOLDER POINTS.
BLACK/YELLOW CANT REMEMBER. THE YELLOW/BLACK IS THE INJECTORS POWER AND SOME OTHER PLACES, THE BROWN/YELLOW GOES CRANK TO CAM POSISTIONG TO OTHER SENSORS, BLACK/WHITE GO TO THE COIL PACKS.

solder the groups up, add some split loom sleeving for easy and bam!

hope it helps someone